HL_5MMI_061

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

5MMI|1|A|A|2423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_061 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0894

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5MMI|1|A|C|2421
5MMI|1|A|G|2422
5MMI|1|A|A|2423
5MMI|1|A|G|2424
5MMI|1|A|U|2425
5MMI|1|A|G|2426
5MMI|1|A|G|2427
5MMI|1|A|A|2428
5MMI|1|A|A|2429
5MMI|1|A|G|2430

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

plastid ribosomal protein uL15c