HL_5MMI_067

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_067 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.1338

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5MMI|1|A|U|2718
5MMI|1|A|G|2719
5MMI|1|A|C|2720
5MMI|1|A|C|2721
5MMI|1|A|C|2722
5MMI|1|A|A|2723

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

plastid ribosomal protein bL17c

Chain W

4.5S ribosomal RNA