HL_5MRE_005

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5MRE|1|A|A|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_005 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0868

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5MRE|1|A|G|234
5MRE|1|A|A|235
5MRE|1|A|A|236
5MRE|1|A|A|237
5MRE|1|A|C|238
5MRE|1|A|A|239
5MRE|1|A|U|240
5MRE|1|A|C|241

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain S

bL28m