HL_5MRE_009

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUAACAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_009 not in the Motif Atlas

Homologous match to HL_9DFE_013

Geometric discrepancy: 0.3051

The information below is about HL_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5MRE|1|A|A|347
5MRE|1|A|U|348
5MRE|1|A|A|349
5MRE|1|A|A|350
5MRE|1|A|C|351
5MRE|1|A|A|352
5MRE|1|A|A|353
5MRE|1|A|A|354
5MRE|1|A|U|355

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain b

mL59