HL_5MRE_019

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAUAAGG

Length

8 nucleotides

Bulged bases

5MRE|1|A|U|884, 5MRE|1|A|G|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_019 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1044

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5MRE|1|A|C|881
5MRE|1|A|G|882
5MRE|1|A|A|883
5MRE|1|A|U|884
5MRE|1|A|A|885
5MRE|1|A|A|886
5MRE|1|A|G|887
5MRE|1|A|G|888

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

uL16m

Chain c

mL60