HL_5MRE_020

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_020 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1386

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5MRE|1|A|G|904
5MRE|1|A|A|905
5MRE|1|A|A|906
5MRE|1|A|A|907
5MRE|1|A|C|908
5MRE|1|A|A|909
5MRE|1|A|G|910
5MRE|1|A|C|911

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain U

uL30m

Chain c

mL60