HL_5MRE_031

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

5MRE|1|A|A|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_031 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1434

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MRE|1|A|U|1581
5MRE|1|A|A|1582
5MRE|1|A|G|1583
5MRE|1|A|A|1584
5MRE|1|A|G|1585
5MRE|1|A|A|1586
5MRE|1|A|A|1587
5MRE|1|A|U|1588
5MRE|1|A|A|1589

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain T

uL29m