HL_5MRE_036

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUAUUAUGAG

Length

10 nucleotides

Bulged bases

5MRE|1|A|U|1814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_036 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.4567

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MRE|1|A|U|1811
5MRE|1|A|U|1812
5MRE|1|A|A|1813
5MRE|1|A|U|1814
5MRE|1|A|U|1815
5MRE|1|A|A|1816
5MRE|1|A|U|1817
5MRE|1|A|G|1818
5MRE|1|A|A|1819
5MRE|1|A|G|1820

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain aa

Small subunit ribosomal RNA; SSU rRNA