HL_5MRE_037

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAUAAUUGA

Length

9 nucleotides

Bulged bases

5MRE|1|A|U|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_037 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.2056

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5MRE|1|A|U|1849
5MRE|1|A|A|1850
5MRE|1|A|U|1851
5MRE|1|A|A|1852
5MRE|1|A|A|1853
5MRE|1|A|U|1854
5MRE|1|A|U|1855
5MRE|1|A|G|1856
5MRE|1|A|A|1857

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain I

uL14m

Chain aa

Small subunit ribosomal RNA; SSU rRNA