HL_5MRE_042

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGCAAAAGUAUCU

Length

13 nucleotides

Bulged bases

5MRE|1|A|A|2294, 5MRE|1|A|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_042 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1282

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5MRE|1|A|A|2290
5MRE|1|A|G|2291
5MRE|1|A|C|2292
5MRE|1|A|A|2293
5MRE|1|A|A|2294
5MRE|1|A|A|2295
5MRE|1|A|A|2296
5MRE|1|A|G|2297
5MRE|1|A|U|2298
5MRE|1|A|A|2299
5MRE|1|A|U|2300
5MRE|1|A|C|2301
5MRE|1|A|U|2302

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain K

uL16m

Chain R

bL27m