HL_5MRE_046

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAAGGAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_046 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.1961

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5MRE|1|A|U|2454
5MRE|1|A|A|2455
5MRE|1|A|A|2456
5MRE|1|A|G|2457
5MRE|1|A|G|2458
5MRE|1|A|A|2459
5MRE|1|A|A|2460
5MRE|1|A|A|2461
5MRE|1|A|A|2462

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

uL5m