HL_5MRE_048

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_048 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1077

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5MRE|1|A|U|2590
5MRE|1|A|A|2591
5MRE|1|A|U|2592
5MRE|1|A|A|2593
5MRE|1|A|A|2594
5MRE|1|A|U|2595
5MRE|1|A|G|2596
5MRE|1|A|G|2597

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

uL5m

Chain R

bL27m