HL_5MRE_058

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUAGUUUA

Length

8 nucleotides

Bulged bases

5MRE|1|A|U|3020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_058 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.1725

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5MRE|1|A|U|3019
5MRE|1|A|U|3020
5MRE|1|A|A|3021
5MRE|1|A|G|3022
5MRE|1|A|U|3023
5MRE|1|A|U|3024
5MRE|1|A|U|3025
5MRE|1|A|A|3026

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain T

uL29m

Chain d

mL67