HL_5MRE_059

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUGAAUACAUAUUAAA

Length

16 nucleotides

Bulged bases

5MRE|1|A|A|3087, 5MRE|1|A|A|3091, 5MRE|1|A|U|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_059 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0803

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5MRE|1|A|U|3081
5MRE|1|A|U|3082
5MRE|1|A|G|3083
5MRE|1|A|A|3084
5MRE|1|A|A|3085
5MRE|1|A|U|3086
5MRE|1|A|A|3087
5MRE|1|A|C|3088
5MRE|1|A|A|3089
5MRE|1|A|U|3090
5MRE|1|A|A|3091
5MRE|1|A|U|3092
5MRE|1|A|U|3093
5MRE|1|A|A|3094
5MRE|1|A|A|3095
5MRE|1|A|A|3096

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain F

uL6m

Chain H

uL13m