HL_5MRE_064

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCUAAAUAC

Length

9 nucleotides

Bulged bases

5MRE|1|aa|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_064 not in the Motif Atlas

Geometric match to HL_5L4O_002

Geometric discrepancy: 0.3547

The information below is about HL_5L4O_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5MRE|1|aa|G|152
5MRE|1|aa|C|153
5MRE|1|aa|U|154
5MRE|1|aa|A|155
5MRE|1|aa|A|156
5MRE|1|aa|A|157
5MRE|1|aa|U|158
5MRE|1|aa|A|159
5MRE|1|aa|C|160

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 55

mS44