HL_5MRE_072

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUAUAU

Length

6 nucleotides

Bulged bases

5MRE|1|aa|U|478, 5MRE|1|aa|A|481

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_072 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3469

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5MRE|1|aa|A|420
5MRE|1|aa|U|478
5MRE|1|aa|A|479
5MRE|1|aa|U|480
5MRE|1|aa|A|481
5MRE|1|aa|U|482

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 66

mS45

Chain DD

uS4m