HL_5MRE_085

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_085 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.0975

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MRE|1|aa|U|1123
5MRE|1|aa|G|1124
5MRE|1|aa|C|1125
5MRE|1|aa|A|1126
5MRE|1|aa|A|1127
5MRE|1|aa|A|1128

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain BB

uS2m

Chain EE

uS5m