HL_5MRE_086

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

5MRE|1|aa|G|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_086 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.2008

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

5MRE|1|aa|A|1136
5MRE|1|aa|U|1137
5MRE|1|aa|U|1138
5MRE|1|aa|A|1139
5MRE|1|aa|A|1140
5MRE|1|aa|G|1141
5MRE|1|aa|U|1142
5MRE|1|aa|U|1143

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain II

uS9m

Chain ZZ

mS37