HL_5MRE_089

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUUAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_089 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.3465

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MRE|1|aa|A|1301
5MRE|1|aa|U|1302
5MRE|1|aa|U|1303
5MRE|1|aa|U|1304
5MRE|1|aa|A|1305
5MRE|1|aa|A|1306
5MRE|1|aa|U|1307
5MRE|1|aa|U|1308

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain MM

uS13m

Chain WW

mS29

Chain XX

mS33

Chain YY

mS35