HL_5MRE_098

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCACUCAUAAUGA

Length

13 nucleotides

Bulged bases

5MRE|1|bb|C|32, 5MRE|1|bb|U|33, 5MRE|1|bb|C|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_098 not in the Motif Atlas

Homologous match to HL_7E8O_002

Geometric discrepancy: 0.3094

The information below is about HL_7E8O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90229.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

5MRE|1|bb|U|29
5MRE|1|bb|C|30
5MRE|1|bb|A|31
5MRE|1|bb|C|32
5MRE|1|bb|U|33
5MRE|1|bb|C|34
5MRE|1|bb|A|35
5MRE|1|bb|U|36
5MRE|1|bb|A|37
5MRE|1|bb|A|38
5MRE|1|bb|U|39
5MRE|1|bb|G|40
5MRE|1|bb|A|41

Current chains

Chain bb

tRNA

Nearby chains

Chain II

uS9m

Chain aa

Small subunit ribosomal RNA; SSU rRNA