HL_5MRF_008

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UGAAAAAAA

Length

9 nucleotides

Bulged bases

5MRF|1|A|A|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_008 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3559

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRF|1|A|U|324
5MRF|1|A|G|325
5MRF|1|A|A|326
5MRF|1|A|A|327
5MRF|1|A|A|328
5MRF|1|A|A|329
5MRF|1|A|A|330
5MRF|1|A|A|331
5MRF|1|A|A|332

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain S

bL28m

Chain Z

bL35m