HL_5MRF_031

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

5MRF|1|A|A|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_031 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1434

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MRF|1|A|U|1581
5MRF|1|A|A|1582
5MRF|1|A|G|1583
5MRF|1|A|A|1584
5MRF|1|A|G|1585
5MRF|1|A|A|1586
5MRF|1|A|A|1587
5MRF|1|A|U|1588
5MRF|1|A|A|1589

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain T

uL29m