HL_5MRF_072

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AUAUAU

Length

6 nucleotides

Bulged bases

5MRF|1|aa|U|478, 5MRF|1|aa|A|481

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_072 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.347

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5MRF|1|aa|A|420
5MRF|1|aa|U|478
5MRF|1|aa|A|479
5MRF|1|aa|U|480
5MRF|1|aa|A|481
5MRF|1|aa|U|482

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 66

mS45

Chain DD

uS4m