HL_5MRF_073

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UGAUUAAA

Length

8 nucleotides

Bulged bases

5MRF|1|aa|A|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_073 not in the Motif Atlas

Geometric match to HL_7RQB_019

Geometric discrepancy: 0.3037

The information below is about HL_7RQB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32369.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

6

Unit IDs

5MRF|1|aa|U|491
5MRF|1|aa|G|492
5MRF|1|aa|A|493
5MRF|1|aa|U|494
5MRF|1|aa|U|495
5MRF|1|aa|A|496
5MRF|1|aa|A|497
5MRF|1|aa|A|498

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 66

mS45

Chain DD

uS4m

Chain YY

mS35