HL_5MRF_082

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_082 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.148

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5MRF|1|aa|U|928
5MRF|1|aa|G|929
5MRF|1|aa|A|930
5MRF|1|aa|A|931
5MRF|1|aa|A|932
5MRF|1|aa|A|933

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain EE

uS5m

Chain HH

uS8m

Chain UU

mS23