HL_5MRX_001

3D structure

PDB id

5MRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

27-nt SRL with a 5-hydroxymethyl cytidine modification

Experimental method

X-RAY DIFFRACTION

Resolution

0.85 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRX_001 not in the Motif Atlas

Geometric match to HL_4NLF_001

Geometric discrepancy: 0.0642

The information below is about HL_4NLF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5MRX|1|A|C|2658
5MRX|1|A|G|2659
5MRX|1|A|A|2660
5MRX|1|A|G|2661
5MRX|1|A|A|2662
5MRX|1|A|G|2663

Current chains

Chain A

RNA (27-MER)

Nearby chains