HL_5MY1_018

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MY1_018 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.33

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5MY1|1|A|C|840
5MY1|1|A|C|841
5MY1|1|A|U|842
5MY1|1|A|U|843
5MY1|1|A|G|844
5MY1|1|A|A|845
5MY1|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S18