5MY1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5MY1_001 | No text annotation | ||
| HL_5MY1_002 | No text annotation | ||
| HL_5MY1_003 | GNRA | ||
| HL_5MY1_004 | GNRA | ||
| HL_5MY1_005 | UNCG | ||
| HL_5MY1_006 | GNRA related | ||
| HL_5MY1_007 | GNRA | ||
| HL_5MY1_008 | No text annotation | ||
| HL_5MY1_009 | UNCG | ||
| HL_5MY1_010 | GNRA | ||
| HL_5MY1_011 | UNCG | ||
| HL_5MY1_012 | No text annotation | ||
| HL_5MY1_013 | No text annotation | ||
| HL_5MY1_014 | GNRA-like with tWH | ||
| HL_5MY1_015 | No text annotation | ||
| HL_5MY1_016 | GNRA | ||
| HL_5MY1_017 | No text annotation | ||
| HL_5MY1_018 | No text annotation | ||
| HL_5MY1_019 | GNRA | ||
| HL_5MY1_020 | GNRA | ||
| HL_5MY1_021 | No text annotation | ||
| HL_5MY1_022 | GNRA | ||
| HL_5MY1_023 | No text annotation | ||
| HL_5MY1_024 | GNRA | ||
| HL_5MY1_025 | T-loop related | ||
| HL_5MY1_026 | No text annotation | ||
| HL_5MY1_027 | GNRA | ||
| HL_5MY1_028 | GNRA | ||
| HL_5MY1_029 | T-loop with 3 stacked bulged bases | ||
| HL_5MY1_030 | No text annotation | ||
| HL_5MY1_031 | UNCG | ||
| HL_5MY1_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5MY1_001 | Single bulged G | ||
| IL_5MY1_002 | Single bulged A | ||
| IL_5MY1_003 | No text annotation | ||
| IL_5MY1_004 | Minor groove platform | ||
| IL_5MY1_005 | Multiple bulged bases | ||
| IL_5MY1_006 | Minor groove platform with extra cWW | ||
| IL_5MY1_007 | Minor groove platform | ||
| IL_5MY1_008 | Single bulged G | ||
| IL_5MY1_009 | Isolated non-canonical cWW pair | ||
| IL_5MY1_010 | Minor groove platform related | ||
| IL_5MY1_011 | Isolated cWH basepair | ||
| IL_5MY1_012 | tWH-tWH-tHW-tHW | ||
| IL_5MY1_013 | Minor groove platform | ||
| IL_5MY1_014 | Kink-turn with non-sequential stacking | ||
| IL_5MY1_015 | No text annotation | ||
| IL_5MY1_016 | C-loop | ||
| IL_5MY1_017 | Single bulged U | ||
| IL_5MY1_018 | C-loop | ||
| IL_5MY1_019 | Single bulged G | ||
| IL_5MY1_020 | No text annotation | ||
| IL_5MY1_021 | No text annotation | ||
| IL_5MY1_022 | tSH-tHW-tWW | ||
| IL_5MY1_023 | No text annotation | ||
| IL_5MY1_024 | Single stack bend | ||
| IL_5MY1_025 | Single stack bend | ||
| IL_5MY1_026 | Single bulged A | ||
| IL_5MY1_027 | SSU/LSU pseudoknot | ||
| IL_5MY1_028 | Kink-turn related | ||
| IL_5MY1_029 | No text annotation | ||
| IL_5MY1_030 | tSH-tHW-tHS | ||
| IL_5MY1_031 | Major groove platform | ||
| IL_5MY1_032 | Major groove minor groove platform; mini C-loop | ||
| IL_5MY1_033 | No text annotation | ||
| IL_5MY1_034 | Major groove platform; stack outside cWW | ||
| IL_5MY1_035 | Single stack bend | ||
| IL_5MY1_036 | Tandem non-canonical cWW pairs | ||
| IL_5MY1_069 | Triple non-canonical cWW pairs | ||
| IL_5MY1_037 | No text annotation | ||
| IL_5MY1_038 | Kink-turn | ||
| IL_5MY1_039 | Left turn | ||
| IL_5MY1_040 | tSH-tHW-tHS | ||
| IL_5MY1_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5MY1_042 | Single bulged A | ||
| IL_5MY1_043 | Single bulged G | ||
| IL_5MY1_044 | Minor groove platform | ||
| IL_5MY1_045 | No text annotation | ||
| IL_5MY1_046 | Minor groove platform | ||
| IL_5MY1_047 | Single stack bend | ||
| IL_5MY1_048 | Single bulged U | ||
| IL_5MY1_049 | Isolated cWS basepair | ||
| IL_5MY1_050 | Minor groove platform | ||
| IL_5MY1_051 | Single bulged A | ||
| IL_5MY1_052 | Isolated non-canonical cWW pair | ||
| IL_5MY1_053 | No text annotation | ||
| IL_5MY1_054 | Minor groove platform | ||
| IL_5MY1_055 | No text annotation | ||
| IL_5MY1_056 | No text annotation | ||
| IL_5MY1_057 | 180 degree turn | ||
| IL_5MY1_058 | Double sheared with non-canonical cWW | ||
| IL_5MY1_059 | No text annotation | ||
| IL_5MY1_060 | No text annotation | ||
| IL_5MY1_061 | No text annotation | ||
| IL_5MY1_062 | Isolated non-canonical cWW pair | ||
| IL_5MY1_070 | No text annotation | ||
| IL_5MY1_063 | No text annotation | ||
| IL_5MY1_064 | Isolated non-canonical cWW pair | ||
| IL_5MY1_065 | Double sheared | ||
| IL_5MY1_066 | Triple sheared related | ||
| IL_5MY1_067 | Single bulged A | ||
| IL_5MY1_068 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5MY1_001 | No text annotation | ||
| J3_5MY1_014 | No text annotation | ||
| J3_5MY1_002 | No text annotation | ||
| J3_5MY1_015 | No text annotation | ||
| J3_5MY1_003 | No text annotation | ||
| J3_5MY1_004 | No text annotation | ||
| J3_5MY1_005 | No text annotation | ||
| J3_5MY1_006 | No text annotation | ||
| J3_5MY1_007 | No text annotation | ||
| J3_5MY1_008 | No text annotation | ||
| J3_5MY1_016 | No text annotation | ||
| J3_5MY1_009 | No text annotation | ||
| J3_5MY1_010 | No text annotation | ||
| J3_5MY1_017 | No text annotation | ||
| J3_5MY1_011 | No text annotation | ||
| J3_5MY1_012 | No text annotation | ||
| J3_5MY1_018 | No text annotation | ||
| J3_5MY1_013 | No text annotation | ||
| J4_5MY1_001 | No text annotation | ||
| J4_5MY1_002 | No text annotation | ||
| J4_5MY1_003 | No text annotation | ||
| J5_5MY1_001 | No text annotation | ||
| J5_5MY1_002 | No text annotation | ||
| J5_5MY1_003 | No text annotation |
Coloring options: