3D structure

PDB id
5MY1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli expressome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MY1_019 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.0637
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

5MY1|1|A|C|862
5MY1|1|A|U|863
5MY1|1|A|A|864
5MY1|1|A|A|865
5MY1|1|A|C|866
5MY1|1|A|G|867

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S5

Coloring options:


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