HL_5MY1_026

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

5MY1|1|A|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MY1_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3148

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5MY1|1|A|G|1134
5MY1|1|A|U|1135
5MY1|1|A|C|1136
5MY1|1|A|C|1137
5MY1|1|A|G|1138
5MY1|1|A|G|1139
5MY1|1|A|C|1140

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9