HL_5NCO_004

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

5NCO|1|A|A|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_004 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.0936

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5NCO|1|A|G|123
5NCO|1|A|G|124
5NCO|1|A|A|125
5NCO|1|A|A|126
5NCO|1|A|A|127
5NCO|1|A|C|128

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34