HL_5NCO_031
3D structure
- PDB id
- 5NCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NCO_031 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.121
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5NCO|1|A|G|1281
5NCO|1|A|U|1282
5NCO|1|A|G|1283
5NCO|1|A|A|1284
5NCO|1|A|A|1285
5NCO|1|A|A|1286
5NCO|1|A|A|1287
5NCO|1|A|G|1288
5NCO|1|A|C|1289
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
- Chain i
- Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
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