HL_5NCO_053

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5NCO|1|A|A|2268, 5NCO|1|A|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0753

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|C|2264
5NCO|1|A|U|2265
5NCO|1|A|A|2266
5NCO|1|A|A|2267
5NCO|1|A|A|2268
5NCO|1|A|G|2269
5NCO|1|A|A|2270
5NCO|1|A|G|2271
5NCO|1|A|U|2272
5NCO|1|A|A|2273
5NCO|1|A|A|2274
5NCO|1|A|C|2275
5NCO|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27