HL_5NCO_065

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NCO|1|A|G|2751, 5NCO|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0824

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|C|2745
5NCO|1|A|U|2746
5NCO|1|A|G|2747
5NCO|1|A|A|2748
5NCO|1|A|A|2749
5NCO|1|A|A|2750
5NCO|1|A|G|2751
5NCO|1|A|C|2752
5NCO|1|A|A|2753
5NCO|1|A|U|2754
5NCO|1|A|C|2755
5NCO|1|A|U|2756
5NCO|1|A|A|2757
5NCO|1|A|A|2758
5NCO|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36