HL_5ND8_012

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5ND8|1|A|A|372, 5ND8|1|A|A|373, 5ND8|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1861

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5ND8|1|A|G|370
5ND8|1|A|U|371
5ND8|1|A|A|372
5ND8|1|A|A|373
5ND8|1|A|U|374
5ND8|1|A|A|375
5ND8|1|A|A|376
5ND8|1|A|U|377
5ND8|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain X

50S ribosomal protein L24