HL_5ND8_027

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

5ND8|1|A|U|1002, 5ND8|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1557

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5ND8|1|A|U|999
5ND8|1|A|G|1000
5ND8|1|A|A|1001
5ND8|1|A|U|1002
5ND8|1|A|A|1003
5ND8|1|A|A|1004
5ND8|1|A|G|1005
5ND8|1|A|G|1006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27