HL_5ND8_029

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5ND8|1|A|A|1114, 5ND8|1|A|G|1115, 5ND8|1|A|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_029 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3784

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5ND8|1|A|C|1108
5ND8|1|A|U|1109
5ND8|1|A|U|1110
5ND8|1|A|A|1111
5ND8|1|A|G|1112
5ND8|1|A|A|1113
5ND8|1|A|A|1114
5ND8|1|A|G|1115
5ND8|1|A|C|1116
5ND8|1|A|A|1117
5ND8|1|A|G|1118

Current chains

Chain A

23S ribosomal RNA

Nearby chains