HL_5ND8_050

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

5ND8|1|A|U|2240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_050 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1666

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5ND8|1|A|C|2236
5ND8|1|A|U|2237
5ND8|1|A|U|2238
5ND8|1|A|A|2239
5ND8|1|A|U|2240
5ND8|1|A|C|2241
5ND8|1|A|G|2242

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2