HL_5ND8_064

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5ND8|1|A|G|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5ND8|1|A|C|2772
5ND8|1|A|U|2773
5ND8|1|A|G|2774
5ND8|1|A|A|2775
5ND8|1|A|A|2776
5ND8|1|A|A|2777
5ND8|1|A|G|2778
5ND8|1|A|C|2779
5ND8|1|A|A|2780
5ND8|1|A|U|2781
5ND8|1|A|C|2782
5ND8|1|A|U|2783
5ND8|1|A|A|2784
5ND8|1|A|A|2785
5ND8|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6