HL_5ND8_073

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_073 not in the Motif Atlas

Geometric match to HL_1L9A_001

Geometric discrepancy: 0.3739

The information below is about HL_1L9A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5ND8|1|a|C|193
5ND8|1|a|G|194
5ND8|1|a|C|195
5ND8|1|a|A|196
5ND8|1|a|U|197
5ND8|1|a|G|198

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17