HL_5ND8_095

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_095 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3293

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

5ND8|1|a|A|1145
5ND8|1|a|U|1146
5ND8|1|a|U|1147
5ND8|1|a|A|1148
5ND8|1|a|A|1149
5ND8|1|a|G|1150
5ND8|1|a|U|1151
5ND8|1|a|U|1152

Current chains

Chain a

16S ribosomal RNA

Nearby chains