HL_5ND9_001
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUACUAACGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ND9_001 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.2372
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5ND9|1|A|U|59
5ND9|1|A|U|60
5ND9|1|A|A|61
5ND9|1|A|C|62
5ND9|1|A|U|63
5ND9|1|A|A|64
5ND9|1|A|A|65
5ND9|1|A|C|66
5ND9|1|A|G|67
5ND9|1|A|A|68
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
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