3D structure

PDB id
5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hibernating ribosome from Staphylococcus aureus (Rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AAAAUU
Length
6 nucleotides
Bulged bases
5ND9|1|A|U|232
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5ND9_007 not in the Motif Atlas
Homologous match to HL_4WF9_007
Geometric discrepancy: 0.274
The information below is about HL_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_51020.1
Basepair signature
cWW-cSW-F
Number of instances in this motif group
11

Unit IDs

5ND9|1|A|A|228
5ND9|1|A|A|229
5ND9|1|A|A|230
5ND9|1|A|A|231
5ND9|1|A|U|232
5ND9|1|A|U|233

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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