HL_5ND9_007
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAAAUU
- Length
- 6 nucleotides
- Bulged bases
- 5ND9|1|A|U|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ND9_007 not in the Motif Atlas
- Homologous match to HL_4WF9_007
- Geometric discrepancy: 0.274
- The information below is about HL_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51020.1
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 11
Unit IDs
5ND9|1|A|A|228
5ND9|1|A|A|229
5ND9|1|A|A|230
5ND9|1|A|A|231
5ND9|1|A|U|232
5ND9|1|A|U|233
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: