HL_5ND9_010

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5ND9|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_010 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2742

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

5ND9|1|A|C|348
5ND9|1|A|U|349
5ND9|1|A|G|350
5ND9|1|A|G|351
5ND9|1|A|A|352
5ND9|1|A|A|353
5ND9|1|A|A|354
5ND9|1|A|G|355

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L24