HL_5ND9_029

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5ND9|1|A|A|1114, 5ND9|1|A|G|1115, 5ND9|1|A|C|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_029 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2124

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5ND9|1|A|C|1108
5ND9|1|A|U|1109
5ND9|1|A|U|1110
5ND9|1|A|A|1111
5ND9|1|A|G|1112
5ND9|1|A|A|1113
5ND9|1|A|A|1114
5ND9|1|A|G|1115
5ND9|1|A|C|1116
5ND9|1|A|A|1117
5ND9|1|A|G|1118

Current chains

Chain A

23S ribosomal RNA

Nearby chains