HL_5ND9_032

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_032 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.1694

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5ND9|1|A|G|1318
5ND9|1|A|U|1319
5ND9|1|A|G|1320
5ND9|1|A|A|1321
5ND9|1|A|G|1322
5ND9|1|A|A|1323
5ND9|1|A|A|1324
5ND9|1|A|U|1325
5ND9|1|A|C|1326

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22