HL_5ND9_046

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUACUAUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_046 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3859

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5ND9|1|A|G|1937
5ND9|1|A|U|1938
5ND9|1|A|A|1939
5ND9|1|A|C|1941
5ND9|1|A|U|1942
5ND9|1|A|A|1943
5ND9|1|A|U|1944
5ND9|1|A|A|1945
5ND9|1|A|A|1946
5ND9|1|A|C|1947

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

Ribosome hibernation promotion factor