HL_5ND9_058

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

5ND9|1|A|U|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.341

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5ND9|1|A|A|2498
5ND9|1|A|G|2499
5ND9|1|A|U|2500
5ND9|1|A|U|2501
5ND9|1|A|C|2502
5ND9|1|A|A|2503
5ND9|1|A|C|2504
5ND9|1|A|A|2505
5ND9|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36