HL_5ND9_077

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

5ND9|1|a|C|338, 5ND9|1|a|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1986

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ND9|1|a|A|328
5ND9|1|a|A|329
5ND9|1|a|C|330
5ND9|1|a|U|331
5ND9|1|a|G|332
5ND9|1|a|A|333
5ND9|1|a|G|334
5ND9|1|a|A|335
5ND9|1|a|C|336
5ND9|1|a|A|337
5ND9|1|a|C|338
5ND9|1|a|G|339
5ND9|1|a|G|340
5ND9|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20