HL_5ND9_087

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUCCCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_087 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.2892

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5ND9|1|a|G|848
5ND9|1|a|U|849
5ND9|1|a|U|850
5ND9|1|a|U|851
5ND9|1|a|C|852
5ND9|1|a|C|853
5ND9|1|a|C|854
5ND9|1|a|G|855
5ND9|1|a|C|856

Current chains

Chain a

16S ribosomal RNA

Nearby chains